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2024 (7)

Md. Shofikul Islam

Genetic variability in exotic cowpea (Vigna unguiculata L.) genotypes

Genetic variability in exotic cowpea (Vigna unguiculata L.) genotypes


Md. Shofikul Islam

PtSSP1 serves as a plant-derived effector mediating symbiosis between Populus and Laccaria bicolor

Liu Y., Zhang F., Devireddy A.R., Ployet R.A., Rush T., Lu H., Hassan M.M., et al (2024) A small secreted protein serves as a plant-derived effector mediating symbiosis between Populus and Laccaria bicolor. Horticulture Research, uhae232. 


Md. Shofikul Islam

Minimizing IP issues associated with gene constructs encoding the Bt toxin - a case study

Hassan, M., Tenazas, F., Williams, A., Chiu, J., Robin, C., Russell, D.A. and Golz, J.F. (2024) Minimizing IP issues associated with gene constructs encoding the Bt toxin - a case study. BMC Biotechnology, 24, 37 (2024)


Md. Shofikul Islam

The Plasminogen-Apple-Nematode (PAN) domain modulates plant defense through proteolysis and ubiquitination

Kuntal De, Pal D., Shanks C., Yates T., Feng K, Jawdy S., Hassan M.M., et al (2024) The Plasminogen-Apple-Nematode (PAN) domain modulates plant defense through proteolysis and ubiquitination (Submitted). 


Md. Shofikul Islam

Advances in the application of single-cell transcriptomics in plant systems and synthetic biology

Islam M.T., Liu Y., Hassan M.M., Abraham P.E., Jacobson D., Tsai C.J., Buell C.R., Tuskan G.A. Yang X (2024) Advances in the application of single-cell transcriptomics in plant systems and synthetic biology. BioDesign Research. 29:6:0029. doi: 10.34133/bdr.0029. eCollection 2024.


Md. Shofikul Islam

Evaluation of Different Drumstick Genotypes (Moringa sp.) Against Salt Stres

M. A. Latif1, M. Robbani and K. Akhter. 2015. Evaluation of Different Drumstick Genotypes (Moringa sp.) Against Salt Stres. The Agriculturists 13(1): 94-100 (2015)


Md. Shofikul Islam

Unraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene

Khalil M.I., Hassan M.M., Samanta S.C., Chowdhury A.K., Hassan M.Z., Ahmed N.U., Somaddar U., Ghosal S., Robin A.H.K., Nath U.K., Mostafa M.G., Burritt D.J., Van C.V., Gupta A., Tran P.L-S, Saha G. (2023). Unraveling the genetic enigma of rice submergence tolerance: Shedding ligh

2023 (23)

Md. Shofikul Islam

Plant Physiology and Biochemistry

Unraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene SUB1A-1



Md. Shofikul Islam

Biological and molecular components for genetically engineering biosensors in plants.

Liu Y., Yuan G., Hassan M.M., Abraham P.E., Mitchell J.M., Jacobson D., Tuskan G.A., Khakhar A., Medford J., Zhao C., Liu C-J., Eckert C.A., Doktycz M.J., Tschaplinski T.J. and Yang X. (2022). Biological and molecular components for genetically engineering biosensors in plants. B


Md. Shofikul Islam

Genome-wide identification and functional prediction of silicon (Si) transporters in poplar.

Hassan M.M., Martin S., Kai F., Yuan G., Matin M.Z., Muchero W., Griffths N., Weston D. and Yang X. (2023). Genome-wide identification and functional prediction of silicon (Si) transporters in poplar. 17: 285–302.


Md. Shofikul Islam

PARA: A new platform for the rapid assembly of gRNA arrays for multiplexed CRISPR technologies.

Yuan G. Martin S., Hassan M.M., Tuskan G.A. and Yang X. (2022). PARA: A new platform for the rapid assembly of gRNA arrays for multiplexed CRISPR technologies. Cells, 11(16), 2467.


Md. Shofikul Islam

Prospects of CRISPR-Cas9 RNP-Mediated Genome Editing of the Non-Model Plant Pathogen Sphaerulina musiva

Tannous J., Sawyer C., Hassan M.M., Labbé J.L., Eckert C. (2023) Prospects of CRISPR-Cas9 RNP-Mediated Genome Editing of the Non-Model Plant Pathogen Sphaerulina musiva. Frontiers in Genome Editing. 5: 1110279.


Md. Shofikul Islam

The Plasminogen-Apple-Nematode (PAN) domain suppresses JA/ET defense pathways in plants.

Kuntal De, Pal D., Shanks C., Yates T., Feng K, Jawdy S., Hassan M.M., Prabhakar P., Yang JY., Chapla D., Moremen K., Urbanowicz B and Muchero W. (2023). The Plasminogen-Apple-Nematode (PAN) domain suppresses JA/ET defense pathways in plants.. bioRxiV.


Md. Shofikul Islam

Split selectable marker systems utilizing inteins facilitate gene stacking in plants

Yuan G., Lu H., De K., Hassan M.M., Muchero W., Tuskan G.A., Yang X (2023). Split selectable marker systems utilizing inteins facilitate gene stacking in plants. Nature Communication Biology 6, 567.



Md. Shofikul Islam

Precise genome editing in plants using gene targeting and prime editing: existing and emerging strategies.

Hassan M.M. Yuan G., Liu Y., Alam M.M., Eckert C.A., Tuskan G.A., Golz J.F. and Yang X. (2022). Precise genome editing in plants using gene targeting and prime editing: existing and emerging strategies. Biotechnology Journal. 17(10):e2100673.


Md. Shofikul Islam

Characterization of Bangladeshi Aus rice landraces under drought stress.

Khalil MI, Hossain MR, Chowdhury AK, Hassan M.M.* (2022). Characterization of Bangladeshi Aus rice landraces under drought stress. SABRAO Journal of Breeding and Genetics. 54(1): 113-126.


Md. Shofikul Islam

Plant-based biosensors for detecting CRISPR-based genome engineering and transcriptional regulation tools.

Yuan G., Hassan M.M., Yao T., Lu, H., Vergara M. M., Labbe J. L., Muchero W., Chen J-G., Tuskan G.A., Abraham P.E., and Yang X (2021). Plant-based biosensors for detecting CRISPR-based genome engineering and transcriptional regulation tools. ACS Synthetic Biology. 10 (12): 3600–3603.


Md. Shofikul Islam

Biological parts for plant biodesign to enhance land-based carbon dioxide reduction.

Yang X., Liu D., Lu H., Weston D.J., Chen J-G., Muchero W., Martin S., Liu Y., Hassan M.M., Yuan G., Kalluri U.C., Tschaplinski T.J., Mitchell J. C., Wullschleger, Tuskan G.A. (2021). Biological parts for plant biodesign to enhance land-based carbon dioxide reduction. BioDesign Research, vol. 2021, 9798714.


Md. Shofikul Islam

Expanding the application of a UV-visible reporter for transient expression and stable transformation in plants.

Yuan G., Lu H., Tang D., Hassan M.M., Li Y., Chen J.G., Tuskan G.A. and Yang X. (2021). Expanding the application of a UV-visible reporter for transient expression and stable transformation in plants. Horticulture Research 8, 234.


Md. Shofikul Islam

Construct design for CRISPR/Cas-based genome editing in plants.

Hassan M.M., Zhang Y., Yuan G., Kuntal De, Muchero W., Chen J.G., Tuskan G.A., Qi Y. and Yang X. (2021). Construct design for CRISPR/Cas-based genome editing in plants. Trends in Plant Science. 26, 11, P1133-1152.


Md. Shofikul Islam

Advances and perspectives in discovery and functional analysis of small secreted proteins in plants.

HU XL., Lu H., Hassan M.M., Zhang J., Yuan G., Abraham P.E., Shrestha H.K., Solis M.I.V., Chen J.G., Tschaplinski T.J., Docktycz M.J., Tuskan G.A., Chen Z.M. and Yang X (2021). Advances and perspectives in discovery and functional analysis of small secreted proteins in plants. Horticulture Research 8, 130.


Md. Shofikul Islam

Plant Biosystems Design Research Roadmap 1.0.

Yang X., Medford J.I., Markel K., Shih P., De Paoli H.C., Trinh C.T., McCormick A.J., Ployet R., Hussey S.G., Myburg A.A., Jensen P.E., Hassan M.M., Zhang J., Muchero M., Kalluri U.C., Yin H., Zhuo R., Abraham P., Chen J-G., Weston D., Yang Y., Liu D., Li Y., Labbe J., Yang B., L


Md. Shofikul Islam

Prime editing technology and its prospect for future applications in plant biology research.

Hassan M.M., Yuan G., Chen J-G., Tuskan G.A., and Yang X. (2020) Prime editing technology and its prospect for future applications in plant biology research. BioDesign Research, Vol 2020: 9350905.


Md. Shofikul Islam

Application of CRISPR/Cas9 Genome Editing Technology for the Improvement of Crops Cultivated in Tropical Climates: Recent Progress, Prospects, and Challenges.

Haque E., Taniguchi H, Hassan M.M., Bhowmik P., Karim M.R., Smiech M., Zhao K., Rahman M., and Islam T. (2018) Application of CRISPR/Cas9 Genome Editing Technology for the Improvement of Crops Cultivated in Tropical Climates: Recent Progress, Prospects, and Challenges. Frontiers in Plant Science. 9:617.


Md. Shofikul Islam

An efficient protocol for somatic embryogenesis of garlic (Allium sativum L.) using root tip as explant.

Hassan M.N., Haque M.S, Hassan M.M., and Haque M.S. (2014) . An efficient protocol for somatic embryogenesis of garlic (Allium sativum L.) using root tip as explant. Journal of Bangladesh Agricultural University. 12 (1): 1-6. Link


Md. Shofikul Islam

Analysis of genetic diversity and population structure of some Bangladeshi rice landraces and HYV.

Hassan M.M., Shamsuddin A.K.M., Islam M.M., Khatun K. and Halder J. (2012) Analysis of genetic diversity and population structure of some Bangladeshi rice landraces and HYV. Journal of Scientific Research. 4 (3): 757-767. Link


Md. Shofikul Islam

Multivariate analysis in lentil (Lens culinaris).

Jewel A.A., Alam A.K.M.M., Latif M.A., Chowdhury A.K., and Hassan M.M. (2011). Multivariate analysis in lentil (Lens culinaris). Bangladesh Journal Plant Breeding and Genetics. 23 (1): 09- 12.


Md. Shofikul Islam

Molecular marker-based characterization and genetic diversity of wheat genotypes in relation to born use efficiency.

Emon R.M., Gustafson J.P., Nguyen H., Musket T., Jahiruddin M., Islam M.A., Haque M.S., Islam M.M., Begum S.N., and Hassan M.M. (2010) Molecular marker-based characterization and genetic diversity of wheat genotypes in relation to born use efficiency. Indian Journal of Genetics and Plant Breeding. 70 (4): 339-348.

2022 (2)

Md. Shofikul Islam

An Intein-Mediated Split–nCas9 System for Base Editing in Plants.

Yuan G., Lu H., De K., Hassan M.M., Liu Y., Muchero W., Li Y., Abraham P.E., Tuskan G.A. and Yang X. (2022). An Intein-Mediated Split–nCas9 System for Base Editing in Plants. ACS Synthetic. Biology. 11, 7, 2513–2517.


2021 (3)

Md. Shofikul Islam

Genetic diversity and yield performance among T. Aman Rice (Oryza sativa L.) landraces in Barishal region of Bangladesh

Genetic diversity and yield performance among T. Aman Rice (Oryza sativa L.) landraces in Barishal region of Bangladesh


Md. Shofikul Islam

Genetic diversity and yield performance among T. Aman Rice (Oryza sativa L.) landraces in Barishal region of Bangladesh

Genetic diversity and yield performance among T. Aman Rice (Oryza sativa L.) landraces in Barishal region of Bangladesh

2020 (3)

Md. Shofikul Islam

Biosystem design to accelerate C3 to CAM evolution.

Yuan G, Hassan M.M., Liu D., Cushman J.C., Lu H., Chen J-G., Tschaplinski T.J., Tuskan G.A., and Yang X. (2020) Biosystem design to accelerate C3 to CAM evolution. BioDesign Research, Vol 2020, 9350905.


Md. Shofikul Islam

Genetic variability, correlation and path analysis of exotic and local hybrid maize (Zea mays L.) genotypes

Genetic variability, correlation and path analysis of exotic and local hybrid maize (Zea mays L.) genotypes


Md. Shofikul Islam

Genetic variations in yield and yield contributing traits of green amaranth

Genetic variations in yield and yield contributing traits of green amaranth

2018 (1)

Md. Shofikul Islam

Seedling Stage under Drought Condition. American Journal of Plant Sciences

S. Aktar, N. Hossain, M. G. Azam, M. Billah, P. L. Biswas, M. A. Latif, M. Rohman, S. A. Bagum, M. S. Uddin. 2018. Phenotyping of Hybrid Maize (Zea mays L.) at Seedling Stage under Drought Condition. American Journal of Plant Sciences. 2018, 9, 2154-2169

2017 (2)

Md. Shofikul Islam

Evaluation and selection of salt tolerant hybrid maize under hydroponics culture.

M. Billah, M. A. Latif, Neelima Hossain And M. Shalim Uddin. 2018. Evaluation and selection of salt tolerant hybrid maize under hydroponics culture. Res. on  Crops  18 (3) : 481-489 (2017)


Md. Shofikul Islam

Genetic variability and path analysis in ash gourd (Benincasa hispida).

M. A. Latif, N.U. Ahmed and M.M. Alam. 2008. Genetic variability and path analysis in ash gourd (Benincasa hispida). Journal of Sher-e-Bangla Agricultural University, Bangladesh. 1(2). 80-87. 

2016 (1)

Md. Shofikul Islam

stability Analysis of Selected Jute (Corchorus capsularis L.) Genotypes in Saline and Non-saline Soils of Bangladesh

M. Billah, B. Sikder, M. A. Latif and A. K. Chowdhury. 2015.  Stability Analysis of Selected Jute (Corchorus capsularis L.) Genotypes in Saline and Non-saline Soils of Bangladesh. The Agriculturists 13(2): 25-35 (2015).

2015 (1)

Md. Shofikul Islam

A Study on Different Arabian Date Palm (Phoenix dactylifera L.) Accessions in Bangladesh

M. J. U. Khan, M. Billah and M. A. LatifA. 2015.      Study on Different Arabian Date Palm (Phoenix dactylifera L.)  Accessions in Bangladesh. The Agriculturists 13(2): 36-43 (2015)

2012 (1)

Md. Shofikul Islam

Yield performance of different wheat genotypes (Triticum aestivum L.) at different salinity levels Bangladesh

M. M. Hassan, M. A. Latif and K. Khatun. 2010. Yield performance of different wheat genotypes (Triticum aestivum L.) at different salinity levels Bangladesh J. Environ. Sci. Vol. 18:37-40

2010 (3)

Md. Shofikul Islam

VARIABILITY AND CHARACTER ASSOCIATION AND PATH COEFFICIENT ANALYSIS IN LENTIL (Lens culinaris Medik)

M A latif, M M Hasan and N Sultana. 2010. Variability, character association and path coefficient analysis of lentil (Lens culinaris). Bangladesh J. Environ. Sci.,Vol. 18:49-51


Md. Shofikul Islam

Growth and green pod yield of garden pea varieties under different nutrient levels

M. K. Alam, M. M. Uddin, M. Ahmed, M. A. Latif and M. M. Rahman. 2010. Growth and green pod yield of garden pea varieties under different nutrient levels. J. Agrofor. Environ Vol. 4(1) :105-107


Md. Shofikul Islam

Multivariate analysis in lentil ( Lens culinaris L.). Bangladesh J. Pl. Breed.

A. Jewel, A. K. Chowdhury, A. K. M. N. Alam and M. A. Latif. 2010. Multivariate analysis in lentil ( Lens culinaris L.). Bangladesh J. Pl. Breed. Genet.,Vol. 23(1) :  9-12.

2007 (2)

Md. Shofikul Islam

Cross Compatibility and Comparative study for different desired characteristics of vine type and semi dwarf type ashgourds( Benincasa hispida (thumb.) Congn.)

M.A. Latif, M.M. Alam and M.M. Rahman. 2007. Cross Compatibility and Comparative Study for Different Desired Characteristics of Vine Type and Semi Dwarf Type Ash Gourds (Benincasa hispida). J. Agric. Sci. Tech. 8(1&2):37-45.


Md. Shofikul Islam

Floral Biology of Different Exotic and Indigenous Ash Gourd Genotypes (Benincasa hispida). International Journal of Plant Breeding and Genetics

M.A. Latif, M.M. Alam, M.K. Alam and M.M. Rahman. 2007. Floral Biology of Different Exotic and Indigenous Ash Gourd Genotypes (Benincasa hispida). International Journal of Plant Breeding and Genetics. 1(2):67-74

2005 (1)

Md. Shofikul Islam

Genetic Variation for the Rate and Duration of Grain Filling in Late Sown Spring Wheat

M.S.H. Sharif, M.A. Latif and M.A. Islam. 2005. Genetic variation for the rate and duration of grain filling in late sown spring wheat. B. J. T. D.  Vol. 18(1&2):129-134. 

2001 (1)

Md. Shofikul Islam

Direct and residual effect of phosphatic fertilizers on rice-rice cropping system at acidic clay loam soil of Bangladesh

M U Nizam, M U Nizam and A Latif 2008. Direct and residual effect of phosphatic fertilizers on rice-rice cropping system at acidic clay loam soil of Bangladesh. J. Subtrop. Agric. Res. Dev. 6(1):415-421