Dr. Khadiza Khatun, and Dr. Md Shafikur Rahman
Journal of Bioscience and Agriculture Research (2026)
11th International Plant Tissue Culture & Biotechnology Conference, University of Dhaka, Bangladesh. 24-26th January, 2026.
11th International Plant Tissue Culture & Biotechnology Conference, University of Dhaka, Bangladesh, 24-26th January, 2026
Plant, Cell & Environment (Impact Factor: 6.3)
6th International Conference of Biotechnology on Health and Agriculture (ICBHA)-2025, September 26-27, 2025. "Environmental Challenges and Mitigation for Sustainable Health and Agriculture. At: SAU TSC Complex, Sher-e-Bangla Agricultural University, Dhaka, Bangladesh.
Dr. Md. Mahmudul Hassan, and Gopal Saha, Ph.D.
Md. Mainul Islam Rashad, Md. Mahmudul Hassan, Hridoy Chandra Dey, Mohammad Golam Mostofa, Lam-Son Phan Tran, Gopal Saha (2025). Genome-wide analysis of silicon transporter genes in upland cotton (Gossypium hirsutum) under heat stress. ICBHA-2025.
Dr. Md. Mahmudul Hassan, Gopal Saha, Ph.D., and Md. Mainul Islam Rashad (মোঃ মাইনুল ইসলাম রাশেদ)
Md. Mainul Islam Rashad, Md. Mahmudul Hassan, Hridoy Chandra Dey, Mohammad Golam Mostofa, Lam-Son Phan Tran, Gopal Saha (2025).Genome-wide analysis of silicon transporter genes in upland cotton (Gossypium hirsutum) under heat stress. ICBHA-2025.
Journal of the Patuakhali Science and Technology University (2024)
SABRAO Journal of Breeding and Genetics
Md. Mainul Islam Rashad, Md. Hasibul Hasan, Md. Mahmudul Hassan. 2025. Expression analysis of apomictic genes in rice. RTC Research Festival 2025, Patuakhali Science and Technology University.
Genetic variability in exotic cowpea (Vigna unguiculata L.) genotypes
Liu Y., Zhang F., Devireddy A.R., Ployet R.A., Rush T., Lu H., Hassan M.M., et al (2024) A small secreted protein serves as a plant-derived effector mediating symbiosis between Populus and Laccaria bicolor. Horticulture Research, uhae232.
Hassan, M., Tenazas, F., Williams, A., Chiu, J., Robin, C., Russell, D.A. and Golz, J.F. (2024) Minimizing IP issues associated with gene constructs encoding the Bt toxin - a case study. BMC Biotechnology, 24, 37 (2024)
Kuntal De, Pal D., Shanks C., Yates T., Feng K, Jawdy S., Hassan M.M., et al (2024) The Plasminogen-Apple-Nematode (PAN) domain modulates plant defense through proteolysis and ubiquitination (Submitted).
Islam M.T., Liu Y., Hassan M.M., Abraham P.E., Jacobson D., Tsai C.J., Buell C.R., Tuskan G.A. Yang X (2024) Advances in the application of single-cell transcriptomics in plant systems and synthetic biology. BioDesign Research. 29:6:0029. doi: 10.34133/bdr.0029. eCollection 2024.
M. A. Latif1, M. Robbani and K. Akhter. 2015. Evaluation of Different Drumstick Genotypes (Moringa sp.) Against Salt Stres. The Agriculturists 13(1): 94-100 (2015)
Khalil M.I., Hassan M.M., Samanta S.C., Chowdhury A.K., Hassan M.Z., Ahmed N.U., Somaddar U., Ghosal S., Robin A.H.K., Nath U.K., Mostafa M.G., Burritt D.J., Van C.V., Gupta A., Tran P.L-S, Saha G. (2023). Unraveling the genetic enigma of rice submergence tolerance: Shedding ligh
Unraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene SUB1A-1
Plant Physiology and Biochemistry (2024)
Liu Y., Yuan G., Hassan M.M., Abraham P.E., Mitchell J.M., Jacobson D., Tuskan G.A., Khakhar A., Medford J., Zhao C., Liu C-J., Eckert C.A., Doktycz M.J., Tschaplinski T.J. and Yang X. (2022). Biological and molecular components for genetically engineering biosensors in plants. B
Hassan M.M., Martin S., Kai F., Yuan G., Matin M.Z., Muchero W., Griffths N., Weston D. and Yang X. (2023). Genome-wide identification and functional prediction of silicon (Si) transporters in poplar. 17: 285–302.
Hassan M.M. (Sep 2023) Split-CRISPR to advance the CRISPR/Cas-based genome editing in plants. 5th International Conference on Biotechnology in Health and Agriculture (ICBHA), University of Dhaka, Bangladesh.
Yuan G. Martin S., Hassan M.M., Tuskan G.A. and Yang X. (2022). PARA: A new platform for the rapid assembly of gRNA arrays for multiplexed CRISPR technologies. Cells, 11(16), 2467.
Hassan M.M., Chowdhury A.K and Islam T. (2021). In silico analysis of gRNA secondary structure to predict its efficacy for plant genome editing. In CRISPR-Cas Methods. 2: p15-22.
Tannous J., Sawyer C., Hassan M.M., Labbé J.L., Eckert C. (2023) Prospects of CRISPR-Cas9 RNP-Mediated Genome Editing of the Non-Model Plant Pathogen Sphaerulina musiva. Frontiers in Genome Editing. 5: 1110279.
Kuntal De, Pal D., Shanks C., Yates T., Feng K, Jawdy S., Hassan M.M., Prabhakar P., Yang JY., Chapla D., Moremen K., Urbanowicz B and Muchero W. (2023). The Plasminogen-Apple-Nematode (PAN) domain suppresses JA/ET defense pathways in plants.. bioRxiV.
Yuan G., Lu H., De K., Hassan M.M., Muchero W., Tuskan G.A., Yang X (2023). Split selectable marker systems utilizing inteins facilitate gene stacking in plants. Nature Communication Biology 6, 567.
Hassan M.M. Yuan G., Liu Y., Alam M.M., Eckert C.A., Tuskan G.A., Golz J.F. and Yang X. (2022). Precise genome editing in plants using gene targeting and prime editing: existing and emerging strategies. Biotechnology Journal. 17(10):e2100673.
Khalil MI, Hossain MR, Chowdhury AK, Hassan M.M.* (2022). Characterization of Bangladeshi Aus rice landraces under drought stress. SABRAO Journal of Breeding and Genetics. 54(1): 113-126.
Yuan G., Hassan M.M., Yao T., Lu, H., Vergara M. M., Labbe J. L., Muchero W., Chen J-G., Tuskan G.A., Abraham P.E., and Yang X (2021). Plant-based biosensors for detecting CRISPR-based genome engineering and transcriptional regulation tools. ACS Synthetic Biology. 10 (12): 3600–3603.
Yang X., Liu D., Lu H., Weston D.J., Chen J-G., Muchero W., Martin S., Liu Y., Hassan M.M., Yuan G., Kalluri U.C., Tschaplinski T.J., Mitchell J. C., Wullschleger, Tuskan G.A. (2021). Biological parts for plant biodesign to enhance land-based carbon dioxide reduction. BioDesign Research, vol. 2021, 9798714.
Yuan G., Lu H., Tang D., Hassan M.M., Li Y., Chen J.G., Tuskan G.A. and Yang X. (2021). Expanding the application of a UV-visible reporter for transient expression and stable transformation in plants. Horticulture Research 8, 234.
Hassan M.M., Zhang Y., Yuan G., Kuntal De, Muchero W., Chen J.G., Tuskan G.A., Qi Y. and Yang X. (2021). Construct design for CRISPR/Cas-based genome editing in plants. Trends in Plant Science. 26, 11, P1133-1152.
HU XL., Lu H., Hassan M.M., Zhang J., Yuan G., Abraham P.E., Shrestha H.K., Solis M.I.V., Chen J.G., Tschaplinski T.J., Docktycz M.J., Tuskan G.A., Chen Z.M. and Yang X (2021). Advances and perspectives in discovery and functional analysis of small secreted proteins in plants. Horticulture Research 8, 130.
Yuan G., Lu H., Hassan M.M., Yao T., Muchero W., Chen J.G., Yang X. and Tuskan G.A (Feb 2021) Application of Base Editing Technology in Poplar. 2021 DOE Genome Meeting, Washington, USA.
Yang X., Medford J.I., Markel K., Shih P., De Paoli H.C., Trinh C.T., McCormick A.J., Ployet R., Hussey S.G., Myburg A.A., Jensen P.E., Hassan M.M., Zhang J., Muchero M., Kalluri U.C., Yin H., Zhuo R., Abraham P., Chen J-G., Weston D., Yang Y., Liu D., Li Y., Labbe J., Yang B., L
Haiwei Lu., Hassan M.M. et al (July 2020) Discovery and functional characterization of poplar mobile proteins involved in plant-fungal communication, Plant Biology 2020, Washington, USA
Hassan M.M., Yuan G., Chen J-G., Tuskan G.A., and Yang X. (2020) Prime editing technology and its prospect for future applications in plant biology research. BioDesign Research, Vol 2020: 9350905.
Vergara M.M., Yuan G., Hassan M.M. et al (June 2020) RNA-based countermeasure against the CRISPR/Cas9 gene-editing tool. ORPA symposium, Oak Ridge, Tennessee, USA.
Yang X., Hassan M.M. et al (February 2020) Experimental characterization of protein movement from plants to ectomycorrhizal fungus, DOE 2020 Genomic Sciences Program (GSP) Annual Principal Investigator (PI) Meeting, Washington, USA.
Yang X., Hassan M.M. et al (January 2020) Can Poplar Plants Use Mobile Protein Signals to Influence Mycorrhizal Fungi? International Plant & Animal Genome XXVIII, San Diego, California, USA.
Bhowmik P., Hassan M.M., Uddin K., and Islam T. (2018). Application of CRISPR-Cas9 genome-editing tool for the improvement of plant abiotic stress tolerance. In Approaches for Enhancing Abiotic Stress Tolerance in Plants. In Approaches for Enhancing Abiotic Stress Tolerance in Plants 442-459. CRC Press, Taylor and Francis Group, USA.
Haque E., Taniguchi H, Hassan M.M., Bhowmik P., Karim M.R., Smiech M., Zhao K., Rahman M., and Islam T. (2018) Application of CRISPR/Cas9 Genome Editing Technology for the Improvement of Crops Cultivated in Tropical Climates: Recent Progress, Prospects, and Challenges. Frontiers in Plant Science. 9:617.
Hassan M.M., William A., Tenazas F., Russell D.A., Robin C., and Golz J.F. (2017, March) Development of a germline-specific gene targeting system for Arabidopsis and Brassica species. Poster presented at the 5th Plant Genome and Gene Editing Congress. Amsterdam, Netherland.
Hassan M.M., Zaw A., & Golz J.F. (2016, October) Improving the efficiency of female germline transformation in Canola. Poster presented at the Brassica2016 conference, Melbourne, Australia.
Hassan M.M., Zaw A., & Golz J.F. (2015, September) Engineering flower structure for germline transformation of Brassica species. Talk delivered at Combio2015 conference. Melbourne, Australia.
Hassan M.N., Haque M.S, Hassan M.M., and Haque M.S. (2014) . An efficient protocol for somatic embryogenesis of garlic (Allium sativum L.) using root tip as explant. Journal of Bangladesh Agricultural University. 12 (1): 1-6. Link
Hassan M.M., Shamsuddin A.K.M., Islam M.M., Khatun K. and Halder J. (2012) Analysis of genetic diversity and population structure of some Bangladeshi rice landraces and HYV. Journal of Scientific Research. 4 (3): 757-767. Link
Jewel A.A., Alam A.K.M.M., Latif M.A., Chowdhury A.K., and Hassan M.M. (2011). Multivariate analysis in lentil (Lens culinaris). Bangladesh Journal Plant Breeding and Genetics. 23 (1): 09- 12.
Emon R.M., Gustafson J.P., Nguyen H., Musket T., Jahiruddin M., Islam M.A., Haque M.S., Islam M.M., Begum S.N., and Hassan M.M. (2010) Molecular marker-based characterization and genetic diversity of wheat genotypes in relation to born use efficiency. Indian Journal of Genetics and Plant Breeding. 70 (4): 339-348.
Yuan G., Lu H., De K., Hassan M.M., Liu Y., Muchero W., Li Y., Abraham P.E., Tuskan G.A. and Yang X. (2022). An Intein-Mediated Split–nCas9 System for Base Editing in Plants. ACS Synthetic. Biology. 11, 7, 2513–2517.
SABRAO Journal of Breeding and Genetics (2022)
Journal of Patuakhali Science and Technology University (2021)
Journal of Crop Science and Biotechnology (Impact Factor: 1.5)
Genetic diversity and yield performance among T. Aman Rice (Oryza sativa L.) landraces in Barishal region of Bangladesh
Yuan G, Hassan M.M., Liu D., Cushman J.C., Lu H., Chen J-G., Tschaplinski T.J., Tuskan G.A., and Yang X. (2020) Biosystem design to accelerate C3 to CAM evolution. BioDesign Research, Vol 2020, 9350905.
Genetic variability, correlation and path analysis of exotic and local hybrid maize (Zea mays L.) genotypes
Dr. Abul Kashem Chowdhury, Dr. Farzana Islam Rume, and Dr. Muhammad Jahangir Hossen
Journal of Patuakhali Science and Technology University, ISSN 1996-4501:3(2),1-8.
S. Aktar, N. Hossain, M. G. Azam, M. Billah, P. L. Biswas, M. A. Latif, M. Rohman, S. A. Bagum, M. S. Uddin. 2018. Phenotyping of Hybrid Maize (Zea mays L.) at Seedling Stage under Drought Condition. American Journal of Plant Sciences. 2018, 9, 2154-2169
M. Billah, M. A. Latif, Neelima Hossain And M. Shalim Uddin. 2018. Evaluation and selection of salt tolerant hybrid maize under hydroponics culture. Res. on Crops 18 (3) : 481-489 (2017)
M. A. Latif, N.U. Ahmed and M.M. Alam. 2008. Genetic variability and path analysis in ash gourd (Benincasa hispida). Journal of Sher-e-Bangla Agricultural University, Bangladesh. 1(2). 80-87.
M. Billah, B. Sikder, M. A. Latif and A. K. Chowdhury. 2015. Stability Analysis of Selected Jute (Corchorus capsularis L.) Genotypes in Saline and Non-saline Soils of Bangladesh. The Agriculturists 13(2): 25-35 (2015).
M. J. U. Khan, M. Billah and M. A. LatifA. 2015. Study on Different Arabian Date Palm (Phoenix dactylifera L.) Accessions in Bangladesh. The Agriculturists 13(2): 36-43 (2015)
M. M. Hassan, M. A. Latif and K. Khatun. 2010. Yield performance of different wheat genotypes (Triticum aestivum L.) at different salinity levels Bangladesh J. Environ. Sci. Vol. 18:37-40
M A latif, M M Hasan and N Sultana. 2010. Variability, character association and path coefficient analysis of lentil (Lens culinaris). Bangladesh J. Environ. Sci.,Vol. 18:49-51
M. K. Alam, M. M. Uddin, M. Ahmed, M. A. Latif and M. M. Rahman. 2010. Growth and green pod yield of garden pea varieties under different nutrient levels. J. Agrofor. Environ Vol. 4(1) :105-107
A. Jewel, A. K. Chowdhury, A. K. M. N. Alam and M. A. Latif. 2010. Multivariate analysis in lentil ( Lens culinaris L.). Bangladesh J. Pl. Breed. Genet.,Vol. 23(1) : 9-12.
M.A. Latif, M.M. Alam and M.M. Rahman. 2007. Cross Compatibility and Comparative Study for Different Desired Characteristics of Vine Type and Semi Dwarf Type Ash Gourds (Benincasa hispida). J. Agric. Sci. Tech. 8(1&2):37-45.
M.A. Latif, M.M. Alam, M.K. Alam and M.M. Rahman. 2007. Floral Biology of Different Exotic and Indigenous Ash Gourd Genotypes (Benincasa hispida). International Journal of Plant Breeding and Genetics. 1(2):67-74
M.S.H. Sharif, M.A. Latif and M.A. Islam. 2005. Genetic variation for the rate and duration of grain filling in late sown spring wheat. B. J. T. D. Vol. 18(1&2):129-134.
M U Nizam, M U Nizam and A Latif 2008. Direct and residual effect of phosphatic fertilizers on rice-rice cropping system at acidic clay loam soil of Bangladesh. J. Subtrop. Agric. Res. Dev. 6(1):415-421